Index

A

add5LagRecipes() (mass.off.Channel method) add_cal_point() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) addline() (in module mass.calibration.fluorescence_lines) alignToReferenceChannel() (mass.off.Channel method) AlKAlpha_AlOFitter() (in module mass.calibration.fluorescence_lines) AlKAlpha_metal_v1992Fitter() (in module mass.calibration.fluorescence_lines) AlKAlphaFitter() (in module mass.calibration.fluorescence_lines) alldata (mass.core.files.LJHFile property) ALLOWED_TYPES (mass.core.channel.NoiseRecords attribute) (mass.core.channel.PulseRecords attribute) AnalysisControl (class in mass.core.controller) annotate_lines() (in module mass.core.utilities) anyfailed (mass.calibration.algorithms.EnergyCalibrationAutocal property) (mass.EnergyCalibrationAutocal property) apply_cuts() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method)

applyWT() (mass.core.optimal_filtering.ToeplitzWhitener method) ArrivalTimeSafeFilter (class in mass.core.optimal_filtering) assume_white_noise() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) AuLAlphaFitter() (in module mass.calibration.fluorescence_lines) AuLBeta1Fitter() (in module mass.calibration.fluorescence_lines) auto_cuts() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) autocal() (mass.calibration.algorithms.EnergyCalibrationAutocal method) (mass.EnergyCalibrationAutocal method) avg_pulses_auto_masks() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method)

B

bad() (mass.core.channel.MicrocalDataSet method) (mass.core.cut.Cuts method) (mass.MicrocalDataSet method) band_limit() (in module mass.core.optimal_filtering) BiLAlphaFitter() (in module mass.calibration.fluorescence_lines) BiLBeta1Fitter() (in module mass.calibration.fluorescence_lines)

boolean_cut_desc (mass.core.cut.CutFieldMixin property) bracketR() (mass.core.optimal_filtering.Filter static method) BrKAlphaFitter() (in module mass.calibration.fluorescence_lines) build_fit_ranges() (in module mass.calibration.algorithms) build_fit_ranges_ph() (in module mass.calibration.algorithms) BUILTIN_BOOLEAN_CUT_FIELDS (mass.core.cut.CutFieldMixin attribute) BUILTIN_CATEGORICAL_CUT_FIELDS (mass.core.cut.CutFieldMixin attribute)

C

cal_point_energies (mass.calibration.energy_calibration.EnergyCalibration property) (mass.EnergyCalibration property) cal_point_names (mass.calibration.energy_calibration.EnergyCalibration property) (mass.EnergyCalibration property) cal_point_phs (mass.calibration.energy_calibration.EnergyCalibration property) (mass.EnergyCalibration property) calc_external_trigger_timing() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) calcExternalTriggerTiming() (mass.off.ChannelGroup method) calibrate() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) calibrateFollowingPlan() (mass.off.Channel method) calibrationPlanAddPoint() (mass.off.Channel method) calibrationPlanInit() (mass.off.Channel method) callback_invert() (in module mass.core.ljh_modify) callback_shift (class in mass.core.ljh_modify) categorical_cut_desc (mass.core.cut.CutFieldMixin property) category_codes() (mass.core.cut.Cuts method) CategoryList (class in mass.core.cut) Channel (class in mass.off) channel (mass.core.channel_group.TESGroup property) (mass.TESGroup property) ChannelGroup (class in mass.off) clear_cut() (mass.core.cut.Cuts method) clear_cuts() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) ClKAlphaFitter() (in module mass.calibration.fluorescence_lines) CoKAlphaFitter() (in module mass.calibration.fluorescence_lines) CoKBetaFitter() (in module mass.calibration.fluorescence_lines) compare_calibrations() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) components() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method) compute() (mass.core.optimal_filtering.ArrivalTimeSafeFilter method) (mass.core.optimal_filtering.ExperimentalFilter method) (mass.core.optimal_filtering.Filter method) compute_5lag_filter() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) compute_ats_filter() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) compute_autocorrelation() (mass.core.channel.NoiseRecords method) compute_average_pulse() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) compute_fancy_power_spectra() (mass.core.channel.NoiseRecords method) compute_filters() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) compute_max_deriv() (in module mass.core.analysis_algorithms) compute_model() (mass.core.fake_data.FakeDataGenerator method) compute_noise() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) compute_noise_nlags() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method)

compute_noise_spectra() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) compute_power_spectrum() (mass.core.channel.NoiseRecords method) compute_power_spectrum_reshape() (mass.core.channel.NoiseRecords method) convert_to_energy() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) copy() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.core.analysis_algorithms.FilterTimeCorrection method) (mass.core.channel.MicrocalDataSet method) (mass.core.channel.NoiseRecords method) (mass.core.channel.PulseRecords method) (mass.core.channel_group.CrosstalkVeto method) (mass.core.channel_group.TESGroup method) (mass.core.files.LJHFile method) (mass.core.files.MicrocalFile method) (mass.core.files.VirtualFile method) (mass.EnergyCalibration method) (mass.MicrocalDataSet method) (mass.TESGroup method) correct_flux_jumps() (in module mass.core.analysis_algorithms) (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) count_rate() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) CrKAlphaFitter() (in module mass.calibration.fluorescence_lines) CrKBetaFitter() (in module mass.calibration.fluorescence_lines) CrosstalkVeto (class in mass.core.channel_group) CuKAlphaFitter() (in module mass.calibration.fluorescence_lines) CuKBetaFitter() (in module mass.calibration.fluorescence_lines) curvename() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) CURVETYPE (mass.calibration.energy_calibration.EnergyCalibration attribute) (mass.EnergyCalibration attribute) cut() (mass.core.cut.Cuts method) CUT_BOOLEAN_FIELD_DESC_DTYPE (mass.core.cut.CutFieldMixin attribute) cut_categorical() (mass.core.cut.Cuts method) CUT_CATEGORICAL_FIELD_DESC_DTYPE (mass.core.cut.CutFieldMixin attribute) cut_category_list (mass.core.cut.CutFieldMixin property) CUT_CATEGORY_LIST_DTYPE (mass.core.cut.CutFieldMixin attribute) cut_field_categories() (mass.core.cut.CutFieldMixin method) cut_field_desc_init() (mass.core.cut.CutFieldMixin method) cut_mask() (mass.core.cut.Cuts method) cut_parameter() (mass.core.cut.Cuts method) cut_summary() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) cut_used_bit_flags (mass.core.cut.CutFieldMixin property) cutAdd() (mass.off.Channel method) CutDesc (class in mass.core.cut) CutFieldMixin (class in mass.core.cut) Cuts (class in mass.core.cut) cutSetDefault() (mass.off.Channel method) (mass.off.ChannelGroup method)

D

DEFAULT_COLUMN_DEFS (mass.calibration.nist_xray_database.NISTXrayLine attribute) DEFAULT_FILENAMES (mass.calibration.nist_xray_database.NISTXrayDBFile attribute) DEFAULT_MAXSEGMENTSIZE (mass.core.channel.NoiseRecords attribute) derivativeLike (mass.off.Channel property) diagnose() (mass.calibration.algorithms.EnergyCalibrationAutocal method) (mass.EnergyCalibrationAutocal method) diagnoseCalibration() (mass.off.Channel method) dicts2namespace() (mass.core.param_dict_base.PrmDictBase static method) dicts2namespace2() (mass.core.param_dict_base.PrmDictBase static method)

drift_correct() (in module mass.core.analysis_algorithms) (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) drop_one_errors() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) dummy_callback() (in module mass.core.ljh_modify) dump_set() (mass.core.param_dict_base.PrmDictBase method) DyKAlphaFitter() (in module mass.calibration.fluorescence_lines) DyKBetaFitter() (in module mass.calibration.fluorescence_lines)

E

e2dedph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) e2ph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) e2uncertainty() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) elapsedTimeSec (mass.core.utilities.InlineUpdater property) elapsedTimeStr (mass.core.utilities.InlineUpdater property) energy2dedph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) energy2ph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) energy2ph_exact() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) energy2uncertainty() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method)

EnergyCalibration (class in mass) (class in mass.calibration.energy_calibration) EnergyCalibrationAutocal (class in mass) (class in mass.calibration.algorithms) energyTimestampLabelToHDF5() (mass.off.Channel method) estimateRiseTime() (in module mass.core.analysis_algorithms) EuKAlphaFitter() (in module mass.calibration.fluorescence_lines) EuKBetaFitter() (in module mass.calibration.fluorescence_lines) expected_attributes (mass.core.channel.MicrocalDataSet attribute) (mass.MicrocalDataSet attribute) ExperimentalFilter (class in mass.core.optimal_filtering) external_trigger_subframe_as_seconds (mass.core.channel_group.TESGroup property) (mass.TESGroup property) external_trigger_subframe_count (mass.core.channel_group.TESGroup property) (mass.TESGroup property)

F

FailedFit (class in mass.calibration.algorithms) FailedToGetModelException FakeDataGenerator (class in mass.core.fake_data) FeKAlphaFitter() (in module mass.calibration.fluorescence_lines) FeKBetaFitter() (in module mass.calibration.fluorescence_lines) FeLAlphaFitter() (in module mass.calibration.fluorescence_lines) filename_glob_expand() (in module mass.core.ljh_util) Filter (class in mass.core.optimal_filtering) filter_data() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) filter_data_5lag_cython() (in module mass.core.analysis_algorithms) filter_signal_lowpass() (in module mass.core.analysis_algorithms) FilterTimeCorrection (class in mass.core.analysis_algorithms) filtPhase (mass.off.Channel property) filtValue (mass.off.Channel property)

find_local_maxima() (in module mass.calibration.algorithms) find_opt_assignment() (in module mass.calibration.algorithms) first_good_dataset (mass.core.channel_group.TESGroup property) (mass.TESGroup property) first_n_good_pulses() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) firstGoodChannel() (mass.off.ChannelGroup method) fit_lines() (mass.calibration.algorithms.EnergyCalibrationAutocal method) (mass.EnergyCalibrationAutocal method) fit_spectral_line() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) fitter() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method) fix_timestamps() (mass.core.channel_group_hdf5_only.TESGroupHDF5 method) flag_crosstalking_pulses() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method)

G

GdKAlphaFitter() (in module mass.calibration.fluorescence_lines) GdKBetaFitter() (in module mass.calibration.fluorescence_lines) generate_microcal_dataset() (mass.core.fake_data.FakeDataGenerator method) generate_tesgroup() (mass.core.fake_data.FakeDataGenerator method) get_lines_by_type() (mass.calibration.nist_xray_database.NISTXrayDBFile method) get_model() (in module mass.calibration.algorithms) get_pulse_model() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) getAttr() (mass.off.Channel method) getAvailableElements() (mass.calibration.hci_lines.NIST_ASD method) getAvailableLevels() (mass.calibration.hci_lines.NIST_ASD method)

getAvailableSpectralCharges() (mass.calibration.hci_lines.NIST_ASD method) getmodel() (in module mass.calibration.algorithms) getSingleLevel() (mass.calibration.hci_lines.NIST_ASD method) getStatesIndicies() (mass.off.Channel method) good() (mass.core.channel.MicrocalDataSet method) (mass.core.cut.Cuts method) (mass.MicrocalDataSet method) good_channels (mass.core.channel_group.TESGroup property) (mass.TESGroup property) GroupLooper (class in mass.core.channel) guess_fit_params() (mass.calibration.algorithms.EnergyCalibrationAutocal method) (mass.EnergyCalibrationAutocal method)

H

HDF5_CHUNK_SIZE (mass.core.channel.MicrocalDataSet attribute) (mass.MicrocalDataSet attribute) hdf5jl_name_from_ljh_name() (in module mass.core.channel_group_hdf5_only) helper_write_pulse() (in module mass.core.ljh_modify) hist() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.off.Channel method) (mass.off.ChannelGroup method) (mass.TESGroup method)

HistogramSmoother (class in mass.core.analysis_algorithms) hists() (mass.core.channel_group.TESGroup method) (mass.off.ChannelGroup method) (mass.TESGroup method) histsToHDF5() (mass.off.Channel method) (mass.off.ChannelGroup method) HoKAlphaFitter() (in module mass.calibration.fluorescence_lines) HoKBetaFitter() (in module mass.calibration.fluorescence_lines)

I

includeBad() (mass.off.ChannelGroup method) InlineUpdater (class in mass.core.utilities) IrLAlphaFitter() (in module mass.calibration.fluorescence_lines) IrLBeta1Fitter() (in module mass.calibration.fluorescence_lines) isOffAttr() (mass.off.Channel method)

isRecipeAttr() (mass.off.Channel method) items() (mass.off.ChannelGroup method) iter_channel_numbers() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) iter_channels() (mass.core.channel_group.TESGroup method) (mass.TESGroup method)

K

keys() (mass.off.ChannelGroup method)

KKAlphaFitter() (in module mass.calibration.fluorescence_lines)

L

learnChannumAndShortname() (mass.off.Channel method) learnDriftCorrection() (mass.off.Channel method) learnPhaseCorrection() (mass.off.Channel method) learnResidualStdDevCut() (mass.off.Channel method) learnTimeDriftCorrection() (mass.off.Channel method) line_names_and_energies() (in module mass.calibration.algorithms) LINE_NICKNAMES (mass.calibration.nist_xray_database.NISTXrayDBFile attribute) LineEnergies() (in module mass.calibration.energy_calibration) linefit() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) ljh_append_traces() (in module mass.core.ljh_modify)

ljh_basename_channum() (in module mass.core.ljh_util) ljh_chan_names() (in module mass.core.ljh_util) ljh_channum() (in module mass.core.ljh_util) ljh_copy_traces() (in module mass.core.ljh_modify) ljh_get_channels() (in module mass.core.ljh_util) ljh_get_channels_both() (in module mass.core.ljh_util) ljh_sort_filenames_numerically() (in module mass.core.ljh_util) ljh_truncate() (in module mass.core.ljh_modify) LJHFile (class in mass.core.files) LJHModify() (in module mass.core.ljh_modify) load_from_hdf5() (mass.calibration.energy_calibration.EnergyCalibration class method) (mass.EnergyCalibration class method) loadChannels() (mass.off.ChannelGroup method) loadRecipeBooks() (mass.off.ChannelGroup method)

M

make_line_fitter() (in module mass.calibration.fluorescence_lines) make_masks() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) make_or_get_master_hdf5_from_julia_hdf5_file() (in module mass.core.channel_group_hdf5_only) make_smooth_histogram() (in module mass.core.analysis_algorithms) markAllGood() (mass.off.ChannelGroup method) markBad() (mass.off.Channel method) markGood() (mass.off.Channel method) mass.calibration module mass.calibration.algorithms module mass.calibration.energy_calibration module mass.calibration.fluorescence_lines module mass.calibration.nist_xray_database module mass.core module mass.core.analysis_algorithms module mass.core.channel module mass.core.channel_group module mass.core.channel_group_hdf5_only module mass.core.controller module mass.core.cut module mass.core.cython_channel module mass.core.fake_data module mass.core.files module mass.core.ljh_modify module mass.core.ljh_util module mass.core.message_logging module

mass.core.optimal_filtering module mass.core.param_dict_base module mass.core.utilities module message() (in module mass.core.param_dict_base) MgKAlpha_metal_v1Fitter() (in module mass.calibration.fluorescence_lines) MgKAlphaFitter() (in module mass.calibration.fluorescence_lines) MicrocalDataSet (class in mass) (class in mass.core.channel) MicrocalFile (class in mass.core.files) minimum_fwhm() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method) MnKAlphaFitter() (in module mass.calibration.fluorescence_lines) MnKBetaFitter() (in module mass.calibration.fluorescence_lines) model() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method) module mass.calibration mass.calibration.algorithms mass.calibration.energy_calibration mass.calibration.fluorescence_lines mass.calibration.nist_xray_database mass.core mass.core.analysis_algorithms mass.core.channel mass.core.channel_group mass.core.channel_group_hdf5_only mass.core.controller mass.core.cut mass.core.cython_channel mass.core.fake_data mass.core.files mass.core.ljh_modify mass.core.ljh_util mass.core.message_logging mass.core.optimal_filtering mass.core.param_dict_base mass.core.utilities MoKAlphaFitter() (in module mass.calibration.fluorescence_lines) MoKBetaFitter() (in module mass.calibration.fluorescence_lines) MouseClickReader (class in mass.core.utilities) multifit() (in module mass.calibration.algorithms)

N

n_good_channels() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) name2ph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) namespace2dicts() (mass.core.param_dict_base.PrmDictBase static method) NbKBeta24Fitter() (in module mass.calibration.fluorescence_lines) NbKBetaFitter() (in module mass.calibration.fluorescence_lines) NdKAlphaFitter() (in module mass.calibration.fluorescence_lines) NdKBetaFitter() (in module mass.calibration.fluorescence_lines) nearest_arrivals() (in module mass.core.analysis_algorithms)

NiKAlphaFitter() (in module mass.calibration.fluorescence_lines) NiKBetaFitter() (in module mass.calibration.fluorescence_lines) NIST_ASD (class in mass.calibration.hci_lines) NISTXrayDBFile (class in mass.calibration.nist_xray_database) NISTXrayLine (class in mass.calibration.nist_xray_database) NoiseRecords (class in mass.core.channel) normalize_filter() (mass.core.optimal_filtering.Filter method) nRecords (mass.off.Channel property) NullUpdater (class in mass.core.utilities) num_good_channels (mass.core.channel_group.TESGroup property) (mass.TESGroup property)

O

open() (mass.core.files.LJHFile class method)

output_basename_from_ljh_fname() (in module mass.core.ljh_util) outputHDF5Filename() (mass.off.ChannelGroup method)

P

p_peak_time (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) PbLAlphaFitter() (in module mass.calibration.fluorescence_lines) PbLBeta1Fitter() (in module mass.calibration.fluorescence_lines) pdf() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method) peak_energy (mass.calibration.fluorescence_lines.SpectralLine property) (mass.SpectralLine property) ph2dedph() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) ph2energy() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) ph2uncertainty() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) phase_correct() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) phase_correct2014() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) pkl_fname (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) plot() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.calibration.fluorescence_lines.SpectralLine method) (mass.core.optimal_filtering.ExperimentalFilter method) (mass.core.optimal_filtering.Filter method) (mass.EnergyCalibration method) (mass.SpectralLine method) plot_all_spectra() (in module mass.calibration.fluorescence_lines) plot_autocorrelation() (mass.core.channel.NoiseRecords method) plot_average_pulses() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_corrections() (mass.core.analysis_algorithms.FilterTimeCorrection method) plot_count_rate() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_filters() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_hist() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) plot_histogram_pages() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_like_reference() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method)

plot_line_energies() (in module mass.calibration.nist_xray_database) plot_line_uncertainties() (in module mass.calibration.nist_xray_database) plot_multipage() (in module mass.core.utilities) plot_noise() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_noise_autocorrelation() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_power_spectrum() (mass.core.channel.NoiseRecords method) plot_summaries() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) plot_summary_pages() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) plot_traces() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) plotAvsB() (mass.off.Channel method) plotAvsB2d() (mass.off.Channel method) plotCompareDriftCorrect() (mass.off.Channel method) plotgain() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) plotHists() (mass.off.ChannelGroup method) plotinvgain() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) plotloggain() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) pretriggerMean (mass.off.Channel property) PrKAlphaFitter() (in module mass.calibration.fluorescence_lines) PrKBetaFitter() (in module mass.calibration.fluorescence_lines) PrmDictBase (class in mass.core.param_dict_base) properties() (mass.core.param_dict_base.PrmDictBase method) PtLAlphaFitter() (in module mass.calibration.fluorescence_lines) PtLBeta1Fitter() (in module mass.calibration.fluorescence_lines) pulse_model_to_hdf5() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) pulseMean (mass.off.Channel property) PulseRecords (class in mass.core.channel) python_compute_max_deriv() (in module mass.core.analysis_algorithms) python_nearest_arrivals() (in module mass.core.analysis_algorithms)

Q

qualityCheckDropOneErrors() (mass.off.Channel method) qualityCheckLinefit() (mass.off.Channel method) (mass.off.ChannelGroup method)

quick_monochromatic_line() (mass.calibration.fluorescence_lines.SpectralLine class method) (mass.SpectralLine class method)

R

read_trace() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.core.files.LJHFile method) (mass.core.files.MicrocalFile method) (mass.core.files.VirtualFile method) (mass.MicrocalDataSet method) (mass.TESGroup method) read_trace_with_timing() (mass.core.files.LJHFile method) reference (mass.calibration.fluorescence_lines.SpectralLine property) (mass.SpectralLine property) refreshFromFiles() (mass.off.ChannelGroup method) register_boolean_cut_fields() (mass.core.cut.CutFieldMixin method) register_categorical_cut_field() (mass.core.cut.CutFieldMixin method) relTimeSec (mass.off.Channel property) remove_cal_point_energy() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) remove_cal_point_name() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method)

remove_cal_point_prefix() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) remove_unpaired_channel_files() (in module mass.core.ljh_util) report() (mass.core.channel_group.TESGroup method) (mass.core.optimal_filtering.Filter method) (mass.TESGroup method) residualStdDev (mass.off.Channel property) resize() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) RestoreTESGroup() (in module mass.core.channel_group) resultPlot() (mass.off.ChannelGroup method) rowcount (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) (mass.off.Channel attribute) rowPeriodSeconds (mass.off.Channel property) rvs() (mass.calibration.fluorescence_lines.SpectralLine method) (mass.SpectralLine method)

S

sample2segnum() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) sanitize_p_filt_phase() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) save_pulse_energies_ascii() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) save_to_hdf5() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) saveRecipeBooks() (mass.off.ChannelGroup method) ScKAlpha_metal_2006Fitter() (in module mass.calibration.fluorescence_lines) ScKAlphaFitter() (in module mass.calibration.fluorescence_lines) ScKBetaFitter() (in module mass.calibration.fluorescence_lines) segnum2sample_range() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) SeKAlphaFitter() (in module mass.calibration.fluorescence_lines) SeKBetaFitter() (in module mass.calibration.fluorescence_lines) select_category() (mass.core.cut.Cuts method) set() (mass.core.param_dict_base.PrmDictBase method) set_all_chan_good() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) set_chan_bad() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) set_chan_good() (mass.core.channel_group.TESGroup method) (mass.TESGroup method) set_curvetype() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) set_fake_data() (mass.core.channel.NoiseRecords method) set_GPR() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) set_hdf5_group() (mass.core.channel.NoiseRecords method) set_in_dict() (mass.core.param_dict_base.PrmDictBase method) set_nearest_neighbors_list() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) set_nonlinearity() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method) set_segment_size() (mass.core.channel.PulseRecords method) (mass.core.channel_group.TESGroup method) (mass.core.files.LJHFile method) (mass.TESGroup method) set_use_approximation() (mass.calibration.energy_calibration.EnergyCalibration method) (mass.EnergyCalibration method)

setDefaultBinsize() (mass.off.ChannelGroup method) shortname (mass.calibration.fluorescence_lines.SpectralLine property) (mass.core.channel.MicrocalDataSet property) (mass.core.channel_group.TESGroup property) (mass.MicrocalDataSet property) shortName (mass.off.ChannelGroup property) shortname (mass.SpectralLine property) (mass.TESGroup property) show_progress() (in module mass.core.utilities) SiKAlphaFitter() (in module mass.calibration.fluorescence_lines) singlefit() (in module mass.calibration.algorithms) SKAlphaFitter() (in module mass.calibration.fluorescence_lines) smart_cuts() (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) SmKAlphaFitter() (in module mass.calibration.fluorescence_lines) SmKBetaFitter() (in module mass.calibration.fluorescence_lines) solveW() (mass.core.optimal_filtering.ToeplitzWhitener method) solveWT() (mass.core.optimal_filtering.ToeplitzWhitener method) source (mass.core.files.LJHFile property) (mass.core.files.VirtualFile property) source() (mass.core.files.MicrocalFile method) SpectralLine (class in mass) (class in mass.calibration.fluorescence_lines) standardControl() (in module mass.core.controller) statesDict (mass.off.Channel property) subframecount (mass.off.Channel property) subframeDivisions (mass.off.Channel property) subframePeriodSeconds (mass.off.Channel property) subframes_after_last_external_trigger (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) subframes_from_nearest_external_trigger (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) subframes_until_next_external_trigger (mass.core.channel.MicrocalDataSet property) (mass.MicrocalDataSet property) summarize_data() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method) summarize_data_cython() (in module mass.core.cython_channel) summarize_filters() (mass.core.channel_group.TESGroup method) (mass.TESGroup method)

T

TbKAlphaFitter() (in module mass.calibration.fluorescence_lines) TbKBetaFitter() (in module mass.calibration.fluorescence_lines) TESGroup (class in mass) (class in mass.core.channel_group) TESGroupHDF5 (class in mass.core.channel_group_hdf5_only) TiKAlphaFitter() (in module mass.calibration.fluorescence_lines) TiKBetaFitter() (in module mass.calibration.fluorescence_lines) time_drift_correct() (in module mass.core.channel) (mass.core.channel.GroupLooper method) (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method)

timeRemaining (mass.core.utilities.InlineUpdater property) timeRemainingStr (mass.core.utilities.InlineUpdater property) timestamp_offset (mass.core.channel_group.TESGroup property) (mass.TESGroup property) ToeplitzWhitener (class in mass.core.optimal_filtering) toOffStyle() (mass.core.channel.MicrocalDataSet method) (mass.core.channel_group.TESGroup method) (mass.MicrocalDataSet method) (mass.TESGroup method)

U

unixnano (mass.off.Channel property) unregister_boolean_cut_fields() (mass.core.cut.CutFieldMixin method) unregister_categorical_cut_field() (mass.core.cut.CutFieldMixin method) update() (mass.core.utilities.InlineUpdater method) (mass.core.utilities.NullUpdater method)

updater() (mass.core.channel.MicrocalDataSet method) (mass.MicrocalDataSet method) usage_set() (mass.core.param_dict_base.PrmDictBase method)

V

values() (mass.off.ChannelGroup method) veto() (mass.core.channel_group.CrosstalkVeto method)

VirtualFile (class in mass.core.files) VKAlphaFitter() (in module mass.calibration.fluorescence_lines) VKBetaFitter() (in module mass.calibration.fluorescence_lines)

W

W() (mass.core.optimal_filtering.ToeplitzWhitener method) whiten() (mass.core.optimal_filtering.ToeplitzWhitener method) why_chan_bad (mass.core.channel_group.TESGroup property) (mass.TESGroup property)

whyChanBad (mass.off.ChannelGroup property) WLAlphaFitter() (in module mass.calibration.fluorescence_lines) WLBeta1Fitter() (in module mass.calibration.fluorescence_lines) WLBeta2Fitter() (in module mass.calibration.fluorescence_lines)

Y

YKAlphaFitter() (in module mass.calibration.fluorescence_lines)

YKBetaFitter() (in module mass.calibration.fluorescence_lines)

Z

ZnKAlphaFitter() (in module mass.calibration.fluorescence_lines) ZnKBetaFitter() (in module mass.calibration.fluorescence_lines)

ZrKAlphaFitter() (in module mass.calibration.fluorescence_lines) ZrKBetaFitter() (in module mass.calibration.fluorescence_lines)